J3_4BPP_007
3D structure
- PDB id
- 4BPP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of the eukaryotic 40S ribosomal subunit in complex with eIF1 and eIF1A - Complex 4
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- CAAGAC*GGGUG*CUAGACG
- Length
- 18 nucleotides
- Bulged bases
- 4BPP|1|A|G|1416
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4BPP_007 not in the Motif Atlas
- Geometric match to J3_8CRE_081
- Geometric discrepancy: 0.2439
- The information below is about J3_8CRE_081
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_87797.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
4BPP|1|A|C|1187
4BPP|1|A|A|1188
4BPP|1|A|A|1189
4BPP|1|A|G|1190
4BPP|1|A|A|1191
4BPP|1|A|C|1192
*
4BPP|1|A|G|1235
4BPP|1|A|G|1236
4BPP|1|A|G|1237
4BPP|1|A|U|1238
4BPP|1|A|G|1239
*
4BPP|1|A|C|1413
4BPP|1|A|U|1414
4BPP|1|A|A|1415
4BPP|1|A|G|1416
4BPP|1|A|A|1417
4BPP|1|A|C|1418
4BPP|1|A|G|1419
Current chains
- Chain A
- 18S RRNA
Nearby chains
- Chain 7
- 40S RIBOSOMAL PROTEIN RPS10E
- Chain 9
- 40S RIBOSOMAL PROTEIN RPS31E
- Chain N
- 40S RIBOSOMAL PROTEIN RPS29E
Coloring options: