J3_4BPP_010
3D structure
- PDB id
- 4BPP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of the eukaryotic 40S ribosomal subunit in complex with eIF1 and eIF1A - Complex 4
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- CAAUG*CGUGUUAG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 4BPP|1|A|U|1444, 4BPP|1|A|A|1511
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4BPP_010 not in the Motif Atlas
- Geometric match to J3_4LFB_009
- Geometric discrepancy: 0.209
- The information below is about J3_4LFB_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.6
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
4BPP|1|A|C|1441
4BPP|1|A|A|1442
4BPP|1|A|A|1443
4BPP|1|A|U|1444
4BPP|1|A|G|1445
*
4BPP|1|A|C|1505
4BPP|1|A|G|1506
4BPP|1|A|U|1507
4BPP|1|A|G|1508
4BPP|1|A|U|1509
4BPP|1|A|U|1510
4BPP|1|A|A|1511
4BPP|1|A|G|1512
*
4BPP|1|A|C|1543
4BPP|1|A|G|1544
4BPP|1|A|A|1545
4BPP|1|A|G|1546
Current chains
- Chain A
- 18S RRNA
Nearby chains
- Chain 8
- 40S RIBOSOMAL PROTEIN RPS25E
- Chain G
- 40S RIBOSOMAL PROTEIN RPS5E
- Chain M
- 40S RIBOSOMAL PROTEIN RPS18E
- Chain T
- 40S RIBOSOMAL PROTEIN RPS19E
Coloring options: