J3_4BTS_046

3D structure

PDB id

4BTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH EIF1 AND EIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4BTS_046 not in the Motif Atlas

Homologous match to J3_4V88_036

Geometric discrepancy: 0.1277

The information below is about J3_4V88_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.2

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

4BTS|1|DA|U|1140
4BTS|1|DA|G|1141
4BTS|1|DA|G|1142
4BTS|1|DA|A|1143
*
4BTS|1|DA|U|1439
4BTS|1|DA|A|1440
4BTS|1|DA|C|1441
*
4BTS|1|DA|G|1546
4BTS|1|DA|G|1547
4BTS|1|DA|A|1548
4BTS|1|DA|A|1549

Current chains

Chain DA

18S ribosomal RNA

Nearby chains

Chain DG

40S RIBOSOMAL PROTEIN RPS5E

Chain DI

40S RIBOSOMAL PROTEIN RPS16E

Chain DM

40S RIBOSOMAL PROTEIN RPS18E

Chain DT

40S RIBOSOMAL PROTEIN RPS19E