J3_4BTS_050

3D structure

PDB id

4BTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH EIF1 AND EIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UG*UGUC*GUUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4BTS_050 not in the Motif Atlas

Homologous match to J3_8P9A_081

Geometric discrepancy: 0.0903

The information below is about J3_8P9A_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.3

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

4BTS|1|DA|U|1265
4BTS|1|DA|G|1266
*
4BTS|1|DA|U|1275
4BTS|1|DA|G|1276
4BTS|1|DA|U|1277
4BTS|1|DA|C|1278
*
4BTS|1|DA|G|1290
4BTS|1|DA|U|1291
4BTS|1|DA|U|1292
4BTS|1|DA|A|1293
4BTS|1|DA|A|1294

Current chains

Chain DA

18S ribosomal RNA

Nearby chains

Chain DB

40S RIBOSOMAL PROTEIN SA

Chain DE

40S RIBOSOMAL PROTEIN RPS2E

Chain DV

40S RIBOSOMAL PROTEIN RPS17E