J3_4BTS_065

3D structure

PDB id

4BTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH EIF1 AND EIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

AUAUUAAC*GAAGAAAAU*AGU

Length

20 nucleotides

Bulged bases

4BTS|1|DA|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4BTS_065 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.0661

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4BTS|1|DA|A|40
4BTS|1|DA|U|41
4BTS|1|DA|A|42
4BTS|1|DA|U|43
4BTS|1|DA|U|44
4BTS|1|DA|A|45
4BTS|1|DA|A|46
4BTS|1|DA|C|47
*
4BTS|1|DA|G|423
4BTS|1|DA|A|424
4BTS|1|DA|A|425
4BTS|1|DA|G|426
4BTS|1|DA|A|427
4BTS|1|DA|A|428
4BTS|1|DA|A|429
4BTS|1|DA|A|430
4BTS|1|DA|U|431
*
4BTS|1|DA|A|456
4BTS|1|DA|G|457
4BTS|1|DA|U|458

Current chains

Chain DA

18S ribosomal RNA

Nearby chains

Chain DD

40S RIBOSOMAL PROTEIN RPS9E

Chain DL

40S RIBOSOMAL PROTEIN S12