J3_4CSU_002

3D structure

PDB id

4CSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with ObgE

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

4CSU|1|B|U|686, 4CSU|1|B|A|792, 4CSU|1|B|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4CSU_002 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.2108

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4CSU|1|B|U|683
4CSU|1|B|G|684
4CSU|1|B|A|685
4CSU|1|B|U|686
4CSU|1|B|C|687
4CSU|1|B|U|688
4CSU|1|B|A|689
*
4CSU|1|B|U|773
4CSU|1|B|G|774
4CSU|1|B|G|775
*
4CSU|1|B|C|791
4CSU|1|B|A|792
4CSU|1|B|A|793
4CSU|1|B|A|794

Current chains

Chain B

23S RRNA

Nearby chains

Chain 6

50S RIBOSOMAL PROTEIN L34

Chain C

50S RIBOSOMAL PROTEIN L2