J3_4CSU_006

3D structure

PDB id

4CSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with ObgE

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

4CSU|1|B|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4CSU_006 not in the Motif Atlas

Homologous match to J3_7RQB_008

Geometric discrepancy: 0.1562

The information below is about J3_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16623.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

4CSU|1|B|C|1306
4CSU|1|B|A|1307
4CSU|1|B|A|1308
4CSU|1|B|G|1309
*
4CSU|1|B|C|1605
4CSU|1|B|C|1606
4CSU|1|B|C|1607
4CSU|1|B|A|1608
4CSU|1|B|A|1609
4CSU|1|B|A|1610
4CSU|1|B|C|1611
*
4CSU|1|B|G|1620
4CSU|1|B|U|1621
4CSU|1|B|G|1622

Current chains

Chain B

23S RRNA

Nearby chains

Chain 6

50S RIBOSOMAL PROTEIN L34