J3_4CSU_009

3D structure

PDB id

4CSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with ObgE

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

4CSU|1|B|A|2518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4CSU_009 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.1459

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

4CSU|1|B|C|2517
4CSU|1|B|A|2518
4CSU|1|B|U|2519
4CSU|1|B|C|2520
*
4CSU|1|B|G|2545
4CSU|1|B|U|2546
4CSU|1|B|A|2547
*
4CSU|1|B|U|2561
4CSU|1|B|U|2562
4CSU|1|B|U|2563
4CSU|1|B|A|2564
4CSU|1|B|A|2565
4CSU|1|B|A|2566
4CSU|1|B|G|2567

Current chains

Chain B

23S RRNA

Nearby chains

Chain 9

GTPASE OBGE/CGTA

Chain K

50S RIBOSOMAL PROTEIN L14