J3_4CSU_016

3D structure

PDB id

4CSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with ObgE

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

AC*GAUAAGC*GAUUU

Length

14 nucleotides

Bulged bases

4CSU|1|B|U|72, 4CSU|1|B|A|74

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4CSU_016 not in the Motif Atlas

Homologous match to J3_9DFE_004

Geometric discrepancy: 0.2384

The information below is about J3_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_35667.2

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

4CSU|1|B|A|56
4CSU|1|B|C|57
*
4CSU|1|B|G|70
4CSU|1|B|A|71
4CSU|1|B|U|72
4CSU|1|B|A|73
4CSU|1|B|A|74
4CSU|1|B|G|75
4CSU|1|B|C|76
*
4CSU|1|B|G|110
4CSU|1|B|A|111
4CSU|1|B|U|112
4CSU|1|B|U|113
4CSU|1|B|U|114

Current chains

Chain B

23S RRNA

Nearby chains

Chain 1

50S RIBOSOMAL PROTEIN L29

Chain 6

50S RIBOSOMAL PROTEIN L34

Chain T

50S RIBOSOMAL PROTEIN L23