J3_4CUV_001

3D structure

PDB id

4CUV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAAAUUUGAAA*UAAUUUGGAG*CGAAG

Length

26 nucleotides

Bulged bases

4CUV|1|1|U|117, 4CUV|1|1|G|120, 4CUV|1|1|A|121, 4CUV|1|1|G|156

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4CUV_001 not in the Motif Atlas

Geometric match to J3_8CRE_001

Geometric discrepancy: 0.0901

The information below is about J3_8CRE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19664.1

Basepair signature

cWW-tHW-F-F-F-F-tHS-F-cWW-F-F-cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4CUV|1|1|C|113
4CUV|1|1|A|114
4CUV|1|1|A|115
4CUV|1|1|A|116
4CUV|1|1|U|117
4CUV|1|1|U|118
4CUV|1|1|U|119
4CUV|1|1|G|120
4CUV|1|1|A|121
4CUV|1|1|A|122
4CUV|1|1|A|123
*
4CUV|1|1|U|149
4CUV|1|1|A|150
4CUV|1|1|A|151
4CUV|1|1|U|152
4CUV|1|1|U|153
4CUV|1|1|U|154
4CUV|1|1|G|155
4CUV|1|1|G|156
4CUV|1|1|A|157
4CUV|1|1|G|158
*
4CUV|1|1|C|263
4CUV|1|1|G|264
4CUV|1|1|A|265
4CUV|1|1|A|266
4CUV|1|1|G|267

Current chains

Chain 1

25S RRNA

Nearby chains