J3_4CUV_013

3D structure

PDB id

4CUV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAUAGCGAACAAGUAC*GGAAAG*CUUG

Length

27 nucleotides

Bulged bases

4CUV|1|1|U|343, 4CUV|1|1|A|351, 4CUV|1|4|U|23

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4CUV_013 not in the Motif Atlas

Geometric match to J3_8P9A_045

Geometric discrepancy: 0.0686

The information below is about J3_8P9A_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07616.1

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

10

Unit IDs

4CUV|1|1|C|340
4CUV|1|1|G|341
4CUV|1|1|A|342
4CUV|1|1|U|343
4CUV|1|1|A|344
4CUV|1|1|G|345
4CUV|1|1|C|346
4CUV|1|1|G|347
4CUV|1|1|A|348
4CUV|1|1|A|349
4CUV|1|1|C|350
4CUV|1|1|A|351
4CUV|1|1|A|352
4CUV|1|1|G|353
4CUV|1|1|U|354
4CUV|1|1|A|355
4CUV|1|1|C|356
*
4CUV|1|1|G|363
4CUV|1|1|G|364
4CUV|1|1|A|365
4CUV|1|1|A|366
4CUV|1|1|A|367
4CUV|1|1|G|368
*
4CUV|1|4|C|21
4CUV|1|4|U|22
4CUV|1|4|U|23
4CUV|1|4|G|24

Current chains

Chain 1

25S RRNA

Chain 4

5.8S RRNA

Nearby chains