J3_4CUV_015

3D structure

PDB id

4CUV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUGAAAAGAAC*GAGUGAAAAAGUACG*CU

Length

28 nucleotides

Bulged bases

4CUV|1|1|A|398, 4CUV|1|1|A|402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4CUV_015 not in the Motif Atlas

Geometric match to J3_8CRE_006

Geometric discrepancy: 0.0794

The information below is about J3_8CRE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4CUV|1|1|A|369
4CUV|1|1|U|370
4CUV|1|1|G|371
4CUV|1|1|A|372
4CUV|1|1|A|373
4CUV|1|1|A|374
4CUV|1|1|A|375
4CUV|1|1|G|376
4CUV|1|1|A|377
4CUV|1|1|A|378
4CUV|1|1|C|379
*
4CUV|1|1|G|390
4CUV|1|1|A|391
4CUV|1|1|G|392
4CUV|1|1|U|393
4CUV|1|1|G|394
4CUV|1|1|A|395
4CUV|1|1|A|396
4CUV|1|1|A|397
4CUV|1|1|A|398
4CUV|1|1|A|399
4CUV|1|1|G|400
4CUV|1|1|U|401
4CUV|1|1|A|402
4CUV|1|1|C|403
4CUV|1|1|G|404
*
4CUV|1|4|C|19
4CUV|1|4|U|20

Current chains

Chain 1

25S RRNA

Chain 4

5.8S RRNA

Nearby chains