J3_4CUV_024

3D structure

PDB id

4CUV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUC*GCCUAUCGAUCC*GGUGCC

Length

21 nucleotides

Bulged bases

4CUV|1|1|C|2760, 4CUV|1|1|C|2797

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4CUV_024 not in the Motif Atlas

Geometric match to J3_8CRE_021

Geometric discrepancy: 0.0946

The information below is about J3_8CRE_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_20992.1

Basepair signature

cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4CUV|1|1|G|2651
4CUV|1|1|U|2652
4CUV|1|1|C|2653
*
4CUV|1|1|G|2754
4CUV|1|1|C|2755
4CUV|1|1|C|2756
4CUV|1|1|U|2757
4CUV|1|1|A|2758
4CUV|1|1|U|2759
4CUV|1|1|C|2760
4CUV|1|1|G|2761
4CUV|1|1|A|2762
4CUV|1|1|U|2763
4CUV|1|1|C|2764
4CUV|1|1|C|2765
*
4CUV|1|1|G|2793
4CUV|1|1|G|2794
4CUV|1|1|U|2795
4CUV|1|1|G|2796
4CUV|1|1|C|2797
4CUV|1|1|C|2798

Current chains

Chain 1

25S RRNA

Nearby chains