J3_4CUV_025

3D structure

PDB id

4CUV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCA

Length

30 nucleotides

Bulged bases

4CUV|1|1|A|3172, 4CUV|1|1|G|3173, 4CUV|1|1|A|3215, 4CUV|1|1|G|3216, 4CUV|1|1|C|3217, 4CUV|1|1|G|3219, 4CUV|1|1|A|3268, 4CUV|1|1|U|3270, 4CUV|1|1|C|3272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4CUV|1|1|U|3171
4CUV|1|1|A|3172
4CUV|1|1|G|3173
4CUV|1|1|A|3174
4CUV|1|1|U|3175
4CUV|1|1|G|3176
*
4CUV|1|1|C|3212
4CUV|1|1|A|3213
4CUV|1|1|U|3214
4CUV|1|1|A|3215
4CUV|1|1|G|3216
4CUV|1|1|C|3217
4CUV|1|1|A|3218
4CUV|1|1|G|3219
4CUV|1|1|G|3220
*
4CUV|1|1|C|3265
4CUV|1|1|G|3266
4CUV|1|1|A|3267
4CUV|1|1|A|3268
4CUV|1|1|U|3269
4CUV|1|1|U|3270
4CUV|1|1|G|3271
4CUV|1|1|C|3272
4CUV|1|1|A|3273
4CUV|1|1|A|3274
4CUV|1|1|U|3275
4CUV|1|1|G|3276
4CUV|1|1|U|3277
4CUV|1|1|C|3278
4CUV|1|1|A|3279

Current chains

Chain 1

25S RRNA

Nearby chains