J3_4CUX_012

3D structure

PDB id

4CUX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGA*UAAUAG*CAUUA

Length

14 nucleotides

Bulged bases

4CUX|1|2|U|864

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4CUX_012 not in the Motif Atlas

Geometric match to J3_8P9A_072

Geometric discrepancy: 0.1473

The information below is about J3_8P9A_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17385.5

Basepair signature

cWW-F-cWW-cWW-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4CUX|1|2|U|633
4CUX|1|2|G|634
4CUX|1|2|A|635
*
4CUX|1|2|U|861
4CUX|1|2|A|862
4CUX|1|2|A|863
4CUX|1|2|U|864
4CUX|1|2|A|865
4CUX|1|2|G|866
*
4CUX|1|2|C|962
4CUX|1|2|A|963
4CUX|1|2|U|964
4CUX|1|2|U|965
4CUX|1|2|A|966

Current chains

Chain 2

18S RRNA

Nearby chains