J3_4CUX_016

3D structure

PDB id

4CUX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGGUCCAGAC*GGGUG*UUAGACGUUCU

Length

26 nucleotides

Bulged bases

4CUX|1|2|A|1217, 4CUX|1|2|G|1445, 4CUX|1|2|C|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4CUX|1|2|A|1211
4CUX|1|2|G|1212
4CUX|1|2|G|1213
4CUX|1|2|U|1214
4CUX|1|2|C|1215
4CUX|1|2|C|1216
4CUX|1|2|A|1217
4CUX|1|2|G|1218
4CUX|1|2|A|1219
4CUX|1|2|C|1220
*
4CUX|1|2|G|1263
4CUX|1|2|G|1264
4CUX|1|2|G|1265
4CUX|1|2|U|1266
4CUX|1|2|G|1267
*
4CUX|1|2|U|1442
4CUX|1|2|U|1443
4CUX|1|2|A|1444
4CUX|1|2|G|1445
4CUX|1|2|A|1446
4CUX|1|2|C|1447
4CUX|1|2|G|1448
4CUX|1|2|U|1449
4CUX|1|2|U|1450
4CUX|1|2|C|1451
4CUX|1|2|U|1452

Current chains

Chain 2

18S RRNA

Nearby chains