J3_4CXE_004

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

UGAACUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

4CXE|1|2|A|1513, 4CXE|1|2|G|1620, 4CXE|1|2|A|1621

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4CXE_004 not in the Motif Atlas

Geometric match to J3_8CRE_009

Geometric discrepancy: 0.1688

The information below is about J3_8CRE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4CXE|1|2|U|1510
4CXE|1|2|G|1511
4CXE|1|2|A|1512
4CXE|1|2|A|1513
4CXE|1|2|C|1514
4CXE|1|2|U|1515
4CXE|1|2|A|1516
*
4CXE|1|2|U|1601
4CXE|1|2|A|1602
4CXE|1|2|G|1603
*
4CXE|1|2|C|1619
4CXE|1|2|G|1620
4CXE|1|2|A|1621
4CXE|1|2|A|1622

Current chains

Chain 2

28S RRNA

Nearby chains