J3_4CXE_016

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

UUGAAAAGAACUUU*AGAGAGUUCAAGAGGGCGUGAAAC*GUGGAUCA

Length

46 nucleotides

Bulged bases

4CXE|1|2|A|380, 4CXE|1|2|G|400, 4CXE|1|2|G|404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4CXE|1|2|U|371
4CXE|1|2|U|372
4CXE|1|2|G|373
4CXE|1|2|A|374
4CXE|1|2|A|375
4CXE|1|2|A|376
4CXE|1|2|A|377
4CXE|1|2|G|378
4CXE|1|2|A|379
4CXE|1|2|A|380
4CXE|1|2|C|381
4CXE|1|2|U|382
4CXE|1|2|U|383
4CXE|1|2|U|384
*
4CXE|1|2|A|389
4CXE|1|2|G|390
4CXE|1|2|A|391
4CXE|1|2|G|392
4CXE|1|2|A|393
4CXE|1|2|G|394
4CXE|1|2|U|395
4CXE|1|2|U|396
4CXE|1|2|C|397
4CXE|1|2|A|398
4CXE|1|2|A|399
4CXE|1|2|G|400
4CXE|1|2|A|401
4CXE|1|2|G|402
4CXE|1|2|G|403
4CXE|1|2|G|404
4CXE|1|2|C|405
4CXE|1|2|G|406
4CXE|1|2|U|407
4CXE|1|2|G|408
4CXE|1|2|A|409
4CXE|1|2|A|410
4CXE|1|2|A|411
4CXE|1|2|C|412
*
4CXE|1|3|G|13
4CXE|1|3|U|14
4CXE|1|3|G|15
4CXE|1|3|G|16
4CXE|1|3|A|17
4CXE|1|3|U|18
4CXE|1|3|C|19
4CXE|1|3|A|20

Current chains

Chain 2

28S RRNA

Chain 3

5.8S RRNA

Nearby chains