J3_4CXE_018

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CGACC*GAGGGAGCGAGACCCGUC*GCACGGGGUCGG

Length

35 nucleotides

Bulged bases

4CXE|1|2|G|941, 4CXE|1|2|A|944, 4CXE|1|2|A|950, 4CXE|1|2|G|1262

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4CXE|1|2|C|697
4CXE|1|2|G|698
4CXE|1|2|A|699
4CXE|1|2|C|700
4CXE|1|2|C|701
*
4CXE|1|2|G|939
4CXE|1|2|A|940
4CXE|1|2|G|941
4CXE|1|2|G|942
4CXE|1|2|G|943
4CXE|1|2|A|944
4CXE|1|2|G|945
4CXE|1|2|C|946
4CXE|1|2|G|947
4CXE|1|2|A|948
4CXE|1|2|G|949
4CXE|1|2|A|950
4CXE|1|2|C|951
4CXE|1|2|C|952
4CXE|1|2|C|953
4CXE|1|2|G|954
4CXE|1|2|U|955
4CXE|1|2|C|956
*
4CXE|1|2|G|1257
4CXE|1|2|C|1258
4CXE|1|2|A|1259
4CXE|1|2|C|1260
4CXE|1|2|G|1261
4CXE|1|2|G|1262
4CXE|1|2|G|1263
4CXE|1|2|G|1264
4CXE|1|2|U|1265
4CXE|1|2|C|1266
4CXE|1|2|G|1267
4CXE|1|2|G|1268

Current chains

Chain 2

28S RRNA

Nearby chains