J3_4CXE_019

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CCGCGCUCUCCC*GCCACGCGCGC*GGCGGAGCGAG

Length

34 nucleotides

Bulged bases

4CXE|1|2|G|960, 4CXE|1|2|U|966, 4CXE|1|2|C|967, 4CXE|1|2|C|968, 4CXE|1|2|C|1216, 4CXE|1|2|C|1217, 4CXE|1|2|A|1218, 4CXE|1|2|G|1224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4CXE|1|2|C|958
4CXE|1|2|C|959
4CXE|1|2|G|960
4CXE|1|2|C|961
4CXE|1|2|G|962
4CXE|1|2|C|963
4CXE|1|2|U|964
4CXE|1|2|C|965
4CXE|1|2|U|966
4CXE|1|2|C|967
4CXE|1|2|C|968
4CXE|1|2|C|969
*
4CXE|1|2|G|1215
4CXE|1|2|C|1216
4CXE|1|2|C|1217
4CXE|1|2|A|1218
4CXE|1|2|C|1219
4CXE|1|2|G|1220
4CXE|1|2|C|1221
4CXE|1|2|G|1222
4CXE|1|2|C|1223
4CXE|1|2|G|1224
4CXE|1|2|C|1225
*
4CXE|1|2|G|1245
4CXE|1|2|G|1246
4CXE|1|2|C|1247
4CXE|1|2|G|1248
4CXE|1|2|G|1249
4CXE|1|2|A|1250
4CXE|1|2|G|1251
4CXE|1|2|C|1252
4CXE|1|2|G|1253
4CXE|1|2|A|1254
4CXE|1|2|G|1255

Current chains

Chain 2

28S RRNA

Nearby chains