J3_4CXE_020

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CCUCC*GGCCAC*GAGGUUCUCUCGG

Length

24 nucleotides

Bulged bases

4CXE|1|2|U|973, 4CXE|1|2|A|1202, 4CXE|1|2|U|1205, 4CXE|1|2|U|1208, 4CXE|1|2|C|1209, 4CXE|1|2|U|1210, 4CXE|1|2|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4CXE|1|2|C|971
4CXE|1|2|C|972
4CXE|1|2|U|973
4CXE|1|2|C|974
4CXE|1|2|C|975
*
4CXE|1|2|G|1054
4CXE|1|2|G|1055
4CXE|1|2|C|1056
4CXE|1|2|C|1057
4CXE|1|2|A|1058
4CXE|1|2|C|1059
*
4CXE|1|2|G|1201
4CXE|1|2|A|1202
4CXE|1|2|G|1203
4CXE|1|2|G|1204
4CXE|1|2|U|1205
4CXE|1|2|U|1206
4CXE|1|2|C|1207
4CXE|1|2|U|1208
4CXE|1|2|C|1209
4CXE|1|2|U|1210
4CXE|1|2|C|1211
4CXE|1|2|G|1212
4CXE|1|2|G|1213

Current chains

Chain 2

28S RRNA

Nearby chains