J3_4CXE_024

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

GAGAUGG*CGUUCCGAAGGGACG*CUCGGCCGAUC

Length

33 nucleotides

Bulged bases

4CXE|1|2|G|2432, 4CXE|1|2|U|2445, 4CXE|1|2|C|2446, 4CXE|1|2|C|2447, 4CXE|1|2|G|2448, 4CXE|1|2|A|2449, 4CXE|1|2|C|2455, 4CXE|1|2|G|2480, 4CXE|1|2|C|2481

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4CXE|1|2|G|2427
4CXE|1|2|A|2428
4CXE|1|2|G|2429
4CXE|1|2|A|2430
4CXE|1|2|U|2431
4CXE|1|2|G|2432
4CXE|1|2|G|2433
*
4CXE|1|2|C|2442
4CXE|1|2|G|2443
4CXE|1|2|U|2444
4CXE|1|2|U|2445
4CXE|1|2|C|2446
4CXE|1|2|C|2447
4CXE|1|2|G|2448
4CXE|1|2|A|2449
4CXE|1|2|A|2450
4CXE|1|2|G|2451
4CXE|1|2|G|2452
4CXE|1|2|G|2453
4CXE|1|2|A|2454
4CXE|1|2|C|2455
4CXE|1|2|G|2456
*
4CXE|1|2|C|2476
4CXE|1|2|U|2477
4CXE|1|2|C|2478
4CXE|1|2|G|2479
4CXE|1|2|G|2480
4CXE|1|2|C|2481
4CXE|1|2|C|2482
4CXE|1|2|G|2483
4CXE|1|2|A|2484
4CXE|1|2|U|2485
4CXE|1|2|C|2486

Current chains

Chain 2

28S RRNA

Nearby chains

Chain 3

5.8S ribosomal RNA; 5.8S rRNA