J3_4CXE_025

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

GGCGGAGAU*AGU*AGGGUGUAAAUCUC

Length

26 nucleotides

Bulged bases

4CXE|1|2|A|2528, 4CXE|1|2|G|2551, 4CXE|1|2|G|2736, 4CXE|1|2|G|2739

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4CXE|1|2|G|2523
4CXE|1|2|G|2524
4CXE|1|2|C|2525
4CXE|1|2|G|2526
4CXE|1|2|G|2527
4CXE|1|2|A|2528
4CXE|1|2|G|2529
4CXE|1|2|A|2530
4CXE|1|2|U|2531
*
4CXE|1|2|A|2550
4CXE|1|2|G|2551
4CXE|1|2|U|2552
*
4CXE|1|2|A|2734
4CXE|1|2|G|2735
4CXE|1|2|G|2736
4CXE|1|2|G|2737
4CXE|1|2|U|2738
4CXE|1|2|G|2739
4CXE|1|2|U|2740
4CXE|1|2|A|2741
4CXE|1|2|A|2742
4CXE|1|2|A|2743
4CXE|1|2|U|2744
4CXE|1|2|C|2745
4CXE|1|2|U|2746
4CXE|1|2|C|2747

Current chains

Chain 2

28S RRNA

Nearby chains