J3_4CXE_028

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

GUGAGGCGGGGGGGCG*CUCGCUUCUGGCGCCAAG*CGACCCGCUC

Length

44 nucleotides

Bulged bases

4CXE|1|2|G|4052, 4CXE|1|2|G|4054, 4CXE|1|2|G|4055, 4CXE|1|2|G|4063, 4CXE|1|2|G|4082, 4CXE|1|2|C|4083, 4CXE|1|2|U|4084, 4CXE|1|2|U|4085, 4CXE|1|2|C|4086, 4CXE|1|2|U|4087, 4CXE|1|2|G|4088, 4CXE|1|2|C|4092, 4CXE|1|2|C|4093, 4CXE|1|2|C|4122, 4CXE|1|2|U|4123

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4CXE|1|2|G|4050
4CXE|1|2|U|4051
4CXE|1|2|G|4052
4CXE|1|2|A|4053
4CXE|1|2|G|4054
4CXE|1|2|G|4055
4CXE|1|2|C|4056
4CXE|1|2|G|4057
4CXE|1|2|G|4058
4CXE|1|2|G|4059
4CXE|1|2|G|4060
4CXE|1|2|G|4061
4CXE|1|2|G|4062
4CXE|1|2|G|4063
4CXE|1|2|C|4064
4CXE|1|2|G|4065
*
4CXE|1|2|C|4079
4CXE|1|2|U|4080
4CXE|1|2|C|4081
4CXE|1|2|G|4082
4CXE|1|2|C|4083
4CXE|1|2|U|4084
4CXE|1|2|U|4085
4CXE|1|2|C|4086
4CXE|1|2|U|4087
4CXE|1|2|G|4088
4CXE|1|2|G|4089
4CXE|1|2|C|4090
4CXE|1|2|G|4091
4CXE|1|2|C|4092
4CXE|1|2|C|4093
4CXE|1|2|A|4094
4CXE|1|2|A|4095
4CXE|1|2|G|4096
*
4CXE|1|2|C|4115
4CXE|1|2|G|4116
4CXE|1|2|A|4117
4CXE|1|2|C|4118
4CXE|1|2|C|4119
4CXE|1|2|C|4120
4CXE|1|2|G|4121
4CXE|1|2|C|4122
4CXE|1|2|U|4123
4CXE|1|2|C|4124

Current chains

Chain 2

28S RRNA

Nearby chains

Chain 3

5.8S ribosomal RNA; 5.8S rRNA