J3_4CXE_030

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CGGUUG*CCUUCG*CGCACCGCACGUUCGUG

Length

29 nucleotides

Bulged bases

4CXE|1|2|U|4711, 4CXE|1|2|U|4712, 4CXE|1|2|U|4837, 4CXE|1|2|A|4893, 4CXE|1|2|C|4894, 4CXE|1|2|C|4895, 4CXE|1|2|G|4896, 4CXE|1|2|C|4897, 4CXE|1|2|G|4900, 4CXE|1|2|U|4901, 4CXE|1|2|U|4902, 4CXE|1|2|C|4903

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4CXE|1|2|C|4708
4CXE|1|2|G|4709
4CXE|1|2|G|4710
4CXE|1|2|U|4711
4CXE|1|2|U|4712
4CXE|1|2|G|4713
*
4CXE|1|2|C|4834
4CXE|1|2|C|4835
4CXE|1|2|U|4836
4CXE|1|2|U|4837
4CXE|1|2|C|4838
4CXE|1|2|G|4839
*
4CXE|1|2|C|4890
4CXE|1|2|G|4891
4CXE|1|2|C|4892
4CXE|1|2|A|4893
4CXE|1|2|C|4894
4CXE|1|2|C|4895
4CXE|1|2|G|4896
4CXE|1|2|C|4897
4CXE|1|2|A|4898
4CXE|1|2|C|4899
4CXE|1|2|G|4900
4CXE|1|2|U|4901
4CXE|1|2|U|4902
4CXE|1|2|C|4903
4CXE|1|2|G|4904
4CXE|1|2|U|4905
4CXE|1|2|G|4906

Current chains

Chain 2

28S RRNA

Nearby chains