J3_4D5L_005
3D structure
- PDB id
- 4D5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- CCGG*CUUCCG*CAAAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4D5L|1|1|C|1094
4D5L|1|1|C|1095
4D5L|1|1|G|1096
4D5L|1|1|G|1097
*
4D5L|1|1|C|1135
4D5L|1|1|U|1136
4D5L|1|1|U|1137
4D5L|1|1|C|1138
4D5L|1|1|C|1139
4D5L|1|1|G|1140
*
4D5L|1|1|C|1147
4D5L|1|1|A|1148
4D5L|1|1|A|1149
4D5L|1|1|A|1150
4D5L|1|1|G|1151
Current chains
- Chain 1
- 18S RRNA 2
Nearby chains
- Chain A
- 40S RIBOSOMAL PROTEIN ES26
- Chain N
- 40S RIBOSOMAL PROTEIN US15
- Chain V
- 40S RIBOSOMAL PROTEIN ES21
- Chain W
- 40S RIBOSOMAL PROTEIN US8
- Chain a
- 40S RIBOSOMAL PROTEIN US2
- Chain b
- 40S RIBOSOMAL PROTEIN ES1
Coloring options: