J3_4D5L_014
3D structure
- PDB id
- 4D5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- CUGGC*GGACAAG*CCCGAGAUUG
- Length
- 22 nucleotides
- Bulged bases
- 4D5L|1|1|A|1454
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4D5L|1|1|C|1391
4D5L|1|1|U|1392
4D5L|1|1|G|1393
4D5L|1|1|G|1394
4D5L|1|1|C|1395
*
4D5L|1|1|G|1450
4D5L|1|1|G|1451
4D5L|1|1|A|1452
4D5L|1|1|C|1453
4D5L|1|1|A|1454
4D5L|1|1|A|1455
4D5L|1|1|G|1456
*
4D5L|1|1|C|1470
4D5L|1|1|C|1471
4D5L|1|1|C|1472
4D5L|1|1|G|1473
4D5L|1|1|A|1474
4D5L|1|1|G|1475
4D5L|1|1|A|1476
4D5L|1|1|U|1477
4D5L|1|1|U|1478
4D5L|1|1|G|1479
Current chains
- Chain 1
- 18S RRNA 2
Nearby chains
- Chain D
- 40S RIBOSOMAL PROTEIN US14
- Chain F
- 40S RIBOSOMAL PROTEIN ES31
- Chain Q
- 40S RIBOSOMAL PROTEIN US9
- Chain R
- 40S RIBOSOMAL PROTEIN ES17
- Chain U
- 40S RIBOSOMAL PROTEIN US10
- Chain c
- 40S RIBOSOMAL PROTEIN US5
- Chain d
- 40S RIBOSOMAL PROTEIN US3
- Chain g
- 40S RIBOSOMAL PROTEIN ES6
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