J3_4D5Y_016
3D structure
- PDB id
- 4D5Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- GCCAUACC*GGGC*GUGC
- Length
- 16 nucleotides
- Bulged bases
- 4D5Y|1|4|U|12
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4D5Y|1|4|G|8
4D5Y|1|4|C|9
4D5Y|1|4|C|10
4D5Y|1|4|A|11
4D5Y|1|4|U|12
4D5Y|1|4|A|13
4D5Y|1|4|C|14
4D5Y|1|4|C|15
*
4D5Y|1|4|G|64
4D5Y|1|4|G|65
4D5Y|1|4|G|66
4D5Y|1|4|C|67
*
4D5Y|1|4|G|108
4D5Y|1|4|U|109
4D5Y|1|4|G|110
4D5Y|1|4|C|111
Current chains
- Chain 4
- 5S Ribosomal RNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain D
- 60S RIBOSOMAL PROTEIN UL18
- Chain I
- 60S RIBOSOMAL PROTEIN UL16
- Chain J
- 60S RIBOSOMAL PROTEIN UL5
- Chain T
- 60S RIBOSOMAL PROTEIN EL21
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