J3_4D5Y_018
3D structure
- PDB id
- 4D5Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- UUGAAAAG*CGUGAAACCG*CGGUGGAUCA
- Length
- 28 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4D5Y|1|2|U|371
4D5Y|1|2|U|372
4D5Y|1|2|G|373
4D5Y|1|2|A|374
4D5Y|1|2|A|375
4D5Y|1|2|A|376
4D5Y|1|2|A|377
4D5Y|1|2|G|378
*
4D5Y|1|2|C|405
4D5Y|1|2|G|406
4D5Y|1|2|U|407
4D5Y|1|2|G|408
4D5Y|1|2|A|409
4D5Y|1|2|A|410
4D5Y|1|2|A|411
4D5Y|1|2|C|412
4D5Y|1|2|C|413
4D5Y|1|2|G|414
*
4D5Y|1|3|C|11
4D5Y|1|3|G|12
4D5Y|1|3|G|13
4D5Y|1|3|U|14
4D5Y|1|3|G|15
4D5Y|1|3|G|16
4D5Y|1|3|A|17
4D5Y|1|3|U|18
4D5Y|1|3|C|19
4D5Y|1|3|A|20
Current chains
- Chain 2
- 28S Ribosomal RNA
- Chain 3
- 5.8S Ribosomal RNA
Nearby chains
- Chain C
- 60S RIBOSOMAL PROTEIN UL4
- Chain P
- 60S RIBOSOMAL PROTEIN UL22
- Chain Y
- 60S RIBOSOMAL PROTEIN UL24
- Chain e
- 60S RIBOSOMAL PROTEIN EL32
- Chain l
- 60S RIBOSOMAL PROTEIN EL39
Coloring options: