J3_4D5Y_030

3D structure

PDB id

4D5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

ACGGUG*CACUGACC*GGGACAGU

Length

22 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4D5Y|1|2|A|3905
4D5Y|1|2|C|3906
4D5Y|1|2|G|3907
4D5Y|1|2|G|3908
4D5Y|1|2|U|3909
4D5Y|1|2|G|3910
*
4D5Y|1|2|C|4040
4D5Y|1|2|A|4041
4D5Y|1|2|C|4042
4D5Y|1|2|U|4043
4D5Y|1|2|G|4044
4D5Y|1|2|A|4045
4D5Y|1|2|C|4046
4D5Y|1|2|C|4047
*
4D5Y|1|2|G|4127
4D5Y|1|2|G|4128
4D5Y|1|2|G|4129
4D5Y|1|2|A|4130
4D5Y|1|2|C|4131
4D5Y|1|2|A|4132
4D5Y|1|2|G|4133
4D5Y|1|2|U|4134

Current chains

Chain 2

28S Ribosomal RNA

Nearby chains

Chain A

60S RIBOSOMAL PROTEIN UL2

Chain G

60S RIBOSOMAL PROTEIN EL8

Chain N

60S RIBOSOMAL PROTEIN EL15

Chain i

60S RIBOSOMAL PROTEIN EL36