J3_4D5Y_041

3D structure

PDB id

4D5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

UU*AGAAGC*GGUGGA

Length

14 nucleotides

Bulged bases

4D5Y|1|2|A|1784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4D5Y|1|2|U|1705
4D5Y|1|2|U|1706
*
4D5Y|1|2|A|1781
4D5Y|1|2|G|1782
4D5Y|1|2|A|1783
4D5Y|1|2|A|1784
4D5Y|1|2|G|1785
4D5Y|1|2|C|1786
*
4D5Y|1|2|G|1810
4D5Y|1|2|G|1811
4D5Y|1|2|U|1812
4D5Y|1|2|G|1813
4D5Y|1|2|G|1814
4D5Y|1|2|A|1815

Current chains

Chain 2

28S Ribosomal RNA

Nearby chains

Chain F

60S RIBOSOMAL PROTEIN UL30

Chain T

60S RIBOSOMAL PROTEIN EL21

Chain b

60S RIBOSOMAL PROTEIN EL29