J3_4D5Y_042
3D structure
- PDB id
- 4D5Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- GAGAUGG*CGUUCCGAAGGGACG*CUCGGCCGAUC
- Length
- 33 nucleotides
- Bulged bases
- 4D5Y|1|2|G|2432, 4D5Y|1|2|U|2445, 4D5Y|1|2|C|2446, 4D5Y|1|2|C|2447, 4D5Y|1|2|G|2448, 4D5Y|1|2|A|2449, 4D5Y|1|2|C|2455, 4D5Y|1|2|G|2480, 4D5Y|1|2|C|2481
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4D5Y|1|2|G|2427
4D5Y|1|2|A|2428
4D5Y|1|2|G|2429
4D5Y|1|2|A|2430
4D5Y|1|2|U|2431
4D5Y|1|2|G|2432
4D5Y|1|2|G|2433
*
4D5Y|1|2|C|2442
4D5Y|1|2|G|2443
4D5Y|1|2|U|2444
4D5Y|1|2|U|2445
4D5Y|1|2|C|2446
4D5Y|1|2|C|2447
4D5Y|1|2|G|2448
4D5Y|1|2|A|2449
4D5Y|1|2|A|2450
4D5Y|1|2|G|2451
4D5Y|1|2|G|2452
4D5Y|1|2|G|2453
4D5Y|1|2|A|2454
4D5Y|1|2|C|2455
4D5Y|1|2|G|2456
*
4D5Y|1|2|C|2476
4D5Y|1|2|U|2477
4D5Y|1|2|C|2478
4D5Y|1|2|G|2479
4D5Y|1|2|G|2480
4D5Y|1|2|C|2481
4D5Y|1|2|C|2482
4D5Y|1|2|G|2483
4D5Y|1|2|A|2484
4D5Y|1|2|U|2485
4D5Y|1|2|C|2486
Current chains
- Chain 2
- 28S Ribosomal RNA
Nearby chains
- Chain 3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain A
- 60S RIBOSOMAL PROTEIN UL2
- Chain G
- 60S RIBOSOMAL PROTEIN EL8
- Chain N
- 60S RIBOSOMAL PROTEIN EL15
- Chain X
- 60S RIBOSOMAL PROTEIN UL23
- Chain j
- 60S RIBOSOMAL PROTEIN EL37
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