J3_4D61_001
3D structure
- PDB id
- 4D61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- AG*CGCAAAU*AGU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4D61_001 not in the Motif Atlas
- Homologous match to J3_8P9A_068
- Geometric discrepancy: 0.1847
- The information below is about J3_8P9A_068
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_58657.1
- Basepair signature
- cWW-cWW-cSW-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
4D61|1|1|A|40
4D61|1|1|G|41
*
4D61|1|1|C|481
4D61|1|1|G|482
4D61|1|1|C|483
4D61|1|1|A|484
4D61|1|1|A|485
4D61|1|1|A|486
4D61|1|1|U|487
*
4D61|1|1|A|512
4D61|1|1|G|513
4D61|1|1|U|514
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain J
- 40S RIBOSOMAL PROTEIN S9
- Chain X
- 40S RIBOSOMAL PROTEIN S23
- Chain h
- EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1
- Chain i
- EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR GTP-BINDING SUBUNIT ERF3A
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