J3_4D61_006
3D structure
- PDB id
- 4D61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- CCAG*CCAGUAA*UGAUUAAG
- Length
- 19 nucleotides
- Bulged bases
- 4D61|1|1|G|1648, 4D61|1|1|A|1679
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4D61_006 not in the Motif Atlas
- Homologous match to J3_8C3A_038
- Geometric discrepancy: 0.5924
- The information below is about J3_8C3A_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.2
- Basepair signature
- cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
4D61|1|1|C|1218
4D61|1|1|C|1219
4D61|1|1|A|1220
4D61|1|1|G|1221
*
4D61|1|1|C|1645
4D61|1|1|C|1646
4D61|1|1|A|1647
4D61|1|1|G|1648
4D61|1|1|U|1649
4D61|1|1|A|1650
4D61|1|1|A|1651
*
4D61|1|1|U|1673
4D61|1|1|G|1674
4D61|1|1|A|1675
4D61|1|1|U|1676
4D61|1|1|U|1677
4D61|1|1|A|1678
4D61|1|1|A|1679
4D61|1|1|G|1680
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain F
- 40S RIBOSOMAL PROTEIN S5
- Chain Q
- 40S RIBOSOMAL PROTEIN S16
- Chain c
- 40S RIBOSOMAL PROTEIN S28
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