J3_8C3A_038

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.2

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8C3A|1|CM|C|1146
8C3A|1|CM|C|1147
8C3A|1|CM|A|1148
8C3A|1|CM|G|1149
*
8C3A|1|CM|C|1568
8C3A|1|CM|U|1569
8C3A|1|CM|A|1570
8C3A|1|CM|G|1571
8C3A|1|CM|U|1572
8C3A|1|CM|A|1573
8C3A|1|CM|A|1574
*
8C3A|1|CM|U|1596
8C3A|1|CM|G|1597
8C3A|1|CM|A|1598
8C3A|1|CM|U|1599
8C3A|1|CM|U|1600
8C3A|1|CM|A|1601
8C3A|1|CM|C|1602
8C3A|1|CM|G|1603

Current chains

Chain CM

18S

Nearby chains

Chain CS

Ribosomal protein S7

Chain DD

40S ribosomal protein S16

Chain DP

40S ribosomal protein S28-B