J3_4D61_012
3D structure
- PDB id
- 4D61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- CCG*UUCCG*CAAAG
- Length
- 13 nucleotides
- Bulged bases
- 4D61|1|1|A|1150
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4D61_012 not in the Motif Atlas
- Homologous match to J3_8P9A_075
- Geometric discrepancy: 0.1446
- The information below is about J3_8P9A_075
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_94999.1
- Basepair signature
- cWW-tWW-cWW-tWW-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
4D61|1|1|C|1094
4D61|1|1|C|1095
4D61|1|1|G|1096
*
4D61|1|1|U|1136
4D61|1|1|U|1137
4D61|1|1|C|1138
4D61|1|1|C|1139
4D61|1|1|G|1140
*
4D61|1|1|C|1147
4D61|1|1|A|1148
4D61|1|1|A|1149
4D61|1|1|A|1150
4D61|1|1|G|1151
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain A
- 40S RIBOSOMAL PROTEIN SA
- Chain N
- 40S RIBOSOMAL PROTEIN S13
- Chain V
- 40S RIBOSOMAL PROTEIN S21
- Chain W
- 40S RIBOSOMAL PROTEIN S15A
- Chain a
- 40S RIBOSOMAL PROTEIN S26
- Chain b
- 40S RIBOSOMAL PROTEIN S27
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