J3_4D67_003

3D structure

PDB id

4D67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CCCUCCCG*CGGGCC*GGUUCUCUCGGG

Length

26 nucleotides

Bulged bases

4D67|1|2|U|973, 4D67|1|2|U|1205, 4D67|1|2|U|1208

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4D67|1|2|C|970
4D67|1|2|C|971
4D67|1|2|C|972
4D67|1|2|U|973
4D67|1|2|C|974
4D67|1|2|C|975
4D67|1|2|C|976
4D67|1|2|G|977
*
4D67|1|2|C|1052
4D67|1|2|G|1053
4D67|1|2|G|1054
4D67|1|2|G|1055
4D67|1|2|C|1056
4D67|1|2|C|1057
*
4D67|1|2|G|1203
4D67|1|2|G|1204
4D67|1|2|U|1205
4D67|1|2|U|1206
4D67|1|2|C|1207
4D67|1|2|U|1208
4D67|1|2|C|1209
4D67|1|2|U|1210
4D67|1|2|C|1211
4D67|1|2|G|1212
4D67|1|2|G|1213
4D67|1|2|G|1214

Current chains

Chain 2

28S RRNA

Nearby chains

Chain C

60S RIBOSOMAL PROTEIN L4

Chain F

60S RIBOSOMAL PROTEIN L7