J3_4D67_009

3D structure

PDB id

4D67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GGAGAUGG*CCAGU*AGGGUGUAAAUC

Length

25 nucleotides

Bulged bases

4D67|1|2|A|2528, 4D67|1|2|G|2736

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4D67|1|2|G|2526
4D67|1|2|G|2527
4D67|1|2|A|2528
4D67|1|2|G|2529
4D67|1|2|A|2530
4D67|1|2|U|2531
4D67|1|2|G|2532
4D67|1|2|G|2533
*
4D67|1|2|C|2548
4D67|1|2|C|2549
4D67|1|2|A|2550
4D67|1|2|G|2551
4D67|1|2|U|2552
*
4D67|1|2|A|2734
4D67|1|2|G|2735
4D67|1|2|G|2736
4D67|1|2|G|2737
4D67|1|2|U|2738
4D67|1|2|G|2739
4D67|1|2|U|2740
4D67|1|2|A|2741
4D67|1|2|A|2742
4D67|1|2|A|2743
4D67|1|2|U|2744
4D67|1|2|C|2745

Current chains

Chain 2

28S RRNA

Nearby chains

Chain Z

60S RIBOSOMAL PROTEIN L27

Chain g

60S RIBOSOMAL PROTEIN L34