J3_4D67_019
3D structure
- PDB id
- 4D67 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- UUGAAAAGAACUUU*AGAGAGUUCAAGAGGGCGUGAAACCG*CGGUGGAUCA
- Length
- 50 nucleotides
- Bulged bases
- 4D67|1|2|A|380, 4D67|1|2|G|400, 4D67|1|2|G|404
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4D67|1|2|U|371
4D67|1|2|U|372
4D67|1|2|G|373
4D67|1|2|A|374
4D67|1|2|A|375
4D67|1|2|A|376
4D67|1|2|A|377
4D67|1|2|G|378
4D67|1|2|A|379
4D67|1|2|A|380
4D67|1|2|C|381
4D67|1|2|U|382
4D67|1|2|U|383
4D67|1|2|U|384
*
4D67|1|2|A|389
4D67|1|2|G|390
4D67|1|2|A|391
4D67|1|2|G|392
4D67|1|2|A|393
4D67|1|2|G|394
4D67|1|2|U|395
4D67|1|2|U|396
4D67|1|2|C|397
4D67|1|2|A|398
4D67|1|2|A|399
4D67|1|2|G|400
4D67|1|2|A|401
4D67|1|2|G|402
4D67|1|2|G|403
4D67|1|2|G|404
4D67|1|2|C|405
4D67|1|2|G|406
4D67|1|2|U|407
4D67|1|2|G|408
4D67|1|2|A|409
4D67|1|2|A|410
4D67|1|2|A|411
4D67|1|2|C|412
4D67|1|2|C|413
4D67|1|2|G|414
*
4D67|1|3|C|11
4D67|1|3|G|12
4D67|1|3|G|13
4D67|1|3|U|14
4D67|1|3|G|15
4D67|1|3|G|16
4D67|1|3|A|17
4D67|1|3|U|18
4D67|1|3|C|19
4D67|1|3|A|20
Current chains
- Chain 2
- 28S RRNA
- Chain 3
- 5.8S RRNA
Nearby chains
- Chain C
- 60S RIBOSOMAL PROTEIN L4
- Chain P
- 60S RIBOSOMAL PROTEIN L17
- Chain Y
- 60S RIBOSOMAL PROTEIN L26
- Chain e
- 60S RIBOSOMAL PROTEIN L32
- Chain l
- 60S RIBOSOMAL PROTEIN L39
Coloring options: