J3_4D67_020

3D structure

PDB id

4D67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GGGUCCGCGCAGUCC*GGUGCG*CGACGUCGGCUACC

Length

35 nucleotides

Bulged bases

4D67|1|2|U|436, 4D67|1|2|G|441, 4D67|1|2|C|1281, 4D67|1|2|U|1282, 4D67|1|2|A|1283

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4D67|1|2|G|433
4D67|1|2|G|434
4D67|1|2|G|435
4D67|1|2|U|436
4D67|1|2|C|437
4D67|1|2|C|438
4D67|1|2|G|439
4D67|1|2|C|440
4D67|1|2|G|441
4D67|1|2|C|442
4D67|1|2|A|443
4D67|1|2|G|444
4D67|1|2|U|445
4D67|1|2|C|446
4D67|1|2|C|447
*
4D67|1|2|G|688
4D67|1|2|G|689
4D67|1|2|U|690
4D67|1|2|G|691
4D67|1|2|C|692
4D67|1|2|G|693
*
4D67|1|2|C|1272
4D67|1|2|G|1273
4D67|1|2|A|1274
4D67|1|2|C|1275
4D67|1|2|G|1276
4D67|1|2|U|1277
4D67|1|2|C|1278
4D67|1|2|G|1279
4D67|1|2|G|1280
4D67|1|2|C|1281
4D67|1|2|U|1282
4D67|1|2|A|1283
4D67|1|2|C|1284
4D67|1|2|C|1285

Current chains

Chain 2

28S RRNA

Nearby chains

Chain 3

5.8S ribosomal RNA; 5.8S rRNA

Chain E

60S RIBOSOMAL PROTEIN L6

Chain e

60S RIBOSOMAL PROTEIN L32

Chain f

60S RIBOSOMAL PROTEIN L35A

Chain t

60S RIBOSOMAL PROTEIN L28