J3_4D67_022

3D structure

PDB id

4D67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CCGCGCUCUCCC*GCCACGCGCGC*GGCGGAGCGAG

Length

34 nucleotides

Bulged bases

4D67|1|2|G|960, 4D67|1|2|U|966, 4D67|1|2|C|967, 4D67|1|2|C|968, 4D67|1|2|C|1216, 4D67|1|2|C|1217, 4D67|1|2|A|1218, 4D67|1|2|G|1224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4D67|1|2|C|958
4D67|1|2|C|959
4D67|1|2|G|960
4D67|1|2|C|961
4D67|1|2|G|962
4D67|1|2|C|963
4D67|1|2|U|964
4D67|1|2|C|965
4D67|1|2|U|966
4D67|1|2|C|967
4D67|1|2|C|968
4D67|1|2|C|969
*
4D67|1|2|G|1215
4D67|1|2|C|1216
4D67|1|2|C|1217
4D67|1|2|A|1218
4D67|1|2|C|1219
4D67|1|2|G|1220
4D67|1|2|C|1221
4D67|1|2|G|1222
4D67|1|2|C|1223
4D67|1|2|G|1224
4D67|1|2|C|1225
*
4D67|1|2|G|1245
4D67|1|2|G|1246
4D67|1|2|C|1247
4D67|1|2|G|1248
4D67|1|2|G|1249
4D67|1|2|A|1250
4D67|1|2|G|1251
4D67|1|2|C|1252
4D67|1|2|G|1253
4D67|1|2|A|1254
4D67|1|2|G|1255

Current chains

Chain 2

28S RRNA

Nearby chains

Chain C

60S RIBOSOMAL PROTEIN L4

Chain F

60S RIBOSOMAL PROTEIN L7