J3_4D67_033

3D structure

PDB id

4D67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CGGUUG*CCUUCG*CGCACCGCACGUUCGUG

Length

29 nucleotides

Bulged bases

4D67|1|2|U|4711, 4D67|1|2|U|4712, 4D67|1|2|U|4837, 4D67|1|2|A|4893, 4D67|1|2|C|4894, 4D67|1|2|C|4895, 4D67|1|2|G|4896, 4D67|1|2|C|4897, 4D67|1|2|G|4900, 4D67|1|2|U|4901, 4D67|1|2|U|4902, 4D67|1|2|C|4903

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4D67|1|2|C|4708
4D67|1|2|G|4709
4D67|1|2|G|4710
4D67|1|2|U|4711
4D67|1|2|U|4712
4D67|1|2|G|4713
*
4D67|1|2|C|4834
4D67|1|2|C|4835
4D67|1|2|U|4836
4D67|1|2|U|4837
4D67|1|2|C|4838
4D67|1|2|G|4839
*
4D67|1|2|C|4890
4D67|1|2|G|4891
4D67|1|2|C|4892
4D67|1|2|A|4893
4D67|1|2|C|4894
4D67|1|2|C|4895
4D67|1|2|G|4896
4D67|1|2|C|4897
4D67|1|2|A|4898
4D67|1|2|C|4899
4D67|1|2|G|4900
4D67|1|2|U|4901
4D67|1|2|U|4902
4D67|1|2|C|4903
4D67|1|2|G|4904
4D67|1|2|U|4905
4D67|1|2|G|4906

Current chains

Chain 2

28S RRNA

Nearby chains

Chain E

60S RIBOSOMAL PROTEIN L6

Chain M

60S RIBOSOMAL PROTEIN L14

Chain O

60S RIBOSOMAL PROTEIN L13A

Chain f

60S RIBOSOMAL PROTEIN L35A