J3_4D67_033
3D structure
- PDB id
- 4D67 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- CGGUUG*CCUUCG*CGCACCGCACGUUCGUG
- Length
- 29 nucleotides
- Bulged bases
- 4D67|1|2|U|4711, 4D67|1|2|U|4712, 4D67|1|2|U|4837, 4D67|1|2|A|4893, 4D67|1|2|C|4894, 4D67|1|2|C|4895, 4D67|1|2|G|4896, 4D67|1|2|C|4897, 4D67|1|2|G|4900, 4D67|1|2|U|4901, 4D67|1|2|U|4902, 4D67|1|2|C|4903
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4D67|1|2|C|4708
4D67|1|2|G|4709
4D67|1|2|G|4710
4D67|1|2|U|4711
4D67|1|2|U|4712
4D67|1|2|G|4713
*
4D67|1|2|C|4834
4D67|1|2|C|4835
4D67|1|2|U|4836
4D67|1|2|U|4837
4D67|1|2|C|4838
4D67|1|2|G|4839
*
4D67|1|2|C|4890
4D67|1|2|G|4891
4D67|1|2|C|4892
4D67|1|2|A|4893
4D67|1|2|C|4894
4D67|1|2|C|4895
4D67|1|2|G|4896
4D67|1|2|C|4897
4D67|1|2|A|4898
4D67|1|2|C|4899
4D67|1|2|G|4900
4D67|1|2|U|4901
4D67|1|2|U|4902
4D67|1|2|C|4903
4D67|1|2|G|4904
4D67|1|2|U|4905
4D67|1|2|G|4906
Current chains
- Chain 2
- 28S RRNA
Nearby chains
- Chain E
- 60S RIBOSOMAL PROTEIN L6
- Chain M
- 60S RIBOSOMAL PROTEIN L14
- Chain O
- 60S RIBOSOMAL PROTEIN L13A
- Chain f
- 60S RIBOSOMAL PROTEIN L35A
Coloring options: