J3_4D67_038

3D structure

PDB id

4D67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CGACC*GAGGGAGCGAGACCCGUC*GCACGGGGUCGG

Length

35 nucleotides

Bulged bases

4D67|1|2|G|941, 4D67|1|2|A|944, 4D67|1|2|A|950, 4D67|1|2|G|1262

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4D67|1|2|C|697
4D67|1|2|G|698
4D67|1|2|A|699
4D67|1|2|C|700
4D67|1|2|C|701
*
4D67|1|2|G|939
4D67|1|2|A|940
4D67|1|2|G|941
4D67|1|2|G|942
4D67|1|2|G|943
4D67|1|2|A|944
4D67|1|2|G|945
4D67|1|2|C|946
4D67|1|2|G|947
4D67|1|2|A|948
4D67|1|2|G|949
4D67|1|2|A|950
4D67|1|2|C|951
4D67|1|2|C|952
4D67|1|2|C|953
4D67|1|2|G|954
4D67|1|2|U|955
4D67|1|2|C|956
*
4D67|1|2|G|1257
4D67|1|2|C|1258
4D67|1|2|A|1259
4D67|1|2|C|1260
4D67|1|2|G|1261
4D67|1|2|G|1262
4D67|1|2|G|1263
4D67|1|2|G|1264
4D67|1|2|U|1265
4D67|1|2|C|1266
4D67|1|2|G|1267
4D67|1|2|G|1268

Current chains

Chain 2

28S RRNA

Nearby chains

Chain C

60S RIBOSOMAL PROTEIN L4

Chain E

60S RIBOSOMAL PROTEIN L6

Chain F

60S RIBOSOMAL PROTEIN L7

Chain e

60S RIBOSOMAL PROTEIN L32

Chain f

60S RIBOSOMAL PROTEIN L35A

Chain t

60S RIBOSOMAL PROTEIN L28