J3_4D67_041

3D structure

PDB id

4D67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

UU*AGAAGC*GGUGGA

Length

14 nucleotides

Bulged bases

4D67|1|2|A|1784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4D67|1|2|U|1705
4D67|1|2|U|1706
*
4D67|1|2|A|1781
4D67|1|2|G|1782
4D67|1|2|A|1783
4D67|1|2|A|1784
4D67|1|2|G|1785
4D67|1|2|C|1786
*
4D67|1|2|G|1810
4D67|1|2|G|1811
4D67|1|2|U|1812
4D67|1|2|G|1813
4D67|1|2|G|1814
4D67|1|2|A|1815

Current chains

Chain 2

28S RRNA

Nearby chains

Chain F

60S RIBOSOMAL PROTEIN L7

Chain T

60S RIBOSOMAL PROTEIN L21

Chain b

60S RIBOSOMAL PROTEIN L29