J3_4D67_042
3D structure
- PDB id
- 4D67 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- GAGAUGG*CGUUCCGAAGGGACG*CUCGGCCGAUC
- Length
- 33 nucleotides
- Bulged bases
- 4D67|1|2|G|2432, 4D67|1|2|U|2445, 4D67|1|2|C|2446, 4D67|1|2|C|2447, 4D67|1|2|G|2448, 4D67|1|2|A|2449, 4D67|1|2|C|2455, 4D67|1|2|G|2480, 4D67|1|2|C|2481
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4D67|1|2|G|2427
4D67|1|2|A|2428
4D67|1|2|G|2429
4D67|1|2|A|2430
4D67|1|2|U|2431
4D67|1|2|G|2432
4D67|1|2|G|2433
*
4D67|1|2|C|2442
4D67|1|2|G|2443
4D67|1|2|U|2444
4D67|1|2|U|2445
4D67|1|2|C|2446
4D67|1|2|C|2447
4D67|1|2|G|2448
4D67|1|2|A|2449
4D67|1|2|A|2450
4D67|1|2|G|2451
4D67|1|2|G|2452
4D67|1|2|G|2453
4D67|1|2|A|2454
4D67|1|2|C|2455
4D67|1|2|G|2456
*
4D67|1|2|C|2476
4D67|1|2|U|2477
4D67|1|2|C|2478
4D67|1|2|G|2479
4D67|1|2|G|2480
4D67|1|2|C|2481
4D67|1|2|C|2482
4D67|1|2|G|2483
4D67|1|2|A|2484
4D67|1|2|U|2485
4D67|1|2|C|2486
Current chains
- Chain 2
- 28S RRNA
Nearby chains
- Chain 3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain A
- 60S RIBOSOMAL PROTEIN L8
- Chain G
- 60S RIBOSOMAL PROTEIN L7A
- Chain N
- 60S RIBOSOMAL PROTEIN L15
- Chain X
- 60S RIBOSOMAL PROTEIN L23A
- Chain j
- 60S RIBOSOMAL PROTEIN L37
Coloring options: