J3_4DR4_007
3D structure
- PDB id
- 4DR4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, cognate transfer RNA anticodon stem-loop and multiple copies of paromomycin molecules bound
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.97 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GACGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4DR4_007 not in the Motif Atlas
- Homologous match to J3_4LFB_007
- Geometric discrepancy: 0.0837
- The information below is about J3_4LFB_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.3
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
4DR4|1|A|C|1063
4DR4|1|A|G|1064
4DR4|1|A|U|1065
4DR4|1|A|C|1066
4DR4|1|A|A|1067
4DR4|1|A|G|1068
*
4DR4|1|A|C|1107
4DR4|1|A|G|1108
4DR4|1|A|C|1109
4DR4|1|A|A|1110
4DR4|1|A|A|1111
4DR4|1|A|C|1112
4DR4|1|A|C|1113
*
4DR4|1|A|G|1187
4DR4|1|A|A|1188
4DR4|1|A|C|1189
4DR4|1|A|G|1190
4DR4|1|A|A|1191
4DR4|1|A|C|1192
4DR4|1|A|G|1193
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain B
- 30S ribosomal protein S2
- Chain C
- 30S ribosomal protein S3
- Chain E
- 30S ribosomal protein S5
- Chain G
- 30S ribosomal protein S7
- Chain I
- 30S ribosomal protein S9
- Chain J
- 30S ribosomal protein S10
- Chain N
- 30S ribosomal protein S14
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