3D structure

PDB id
4DR7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin bound
Experimental method
X-RAY DIFFRACTION
Resolution
3.75 Å

Loop

Sequence
CGUCAG*CGCAACC*GACGACG
Length
20 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4DR7_007 not in the Motif Atlas
Homologous match to J3_4LFB_007
Geometric discrepancy: 0.0802
The information below is about J3_4LFB_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_08394.3
Basepair signature
cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

4DR7|1|A|C|1063
4DR7|1|A|G|1064
4DR7|1|A|U|1065
4DR7|1|A|C|1066
4DR7|1|A|A|1067
4DR7|1|A|G|1068
*
4DR7|1|A|C|1107
4DR7|1|A|G|1108
4DR7|1|A|C|1109
4DR7|1|A|A|1110
4DR7|1|A|A|1111
4DR7|1|A|C|1112
4DR7|1|A|C|1113
*
4DR7|1|A|G|1187
4DR7|1|A|A|1188
4DR7|1|A|C|1189
4DR7|1|A|G|1190
4DR7|1|A|A|1191
4DR7|1|A|C|1192
4DR7|1|A|G|1193

Current chains

Chain A
16S rRNA

Nearby chains

Chain B
30S ribosomal protein S2
Chain C
30S ribosomal protein S3
Chain E
30S ribosomal protein S5
Chain G
30S ribosomal protein S7
Chain I
30S ribosomal protein S9
Chain J
30S ribosomal protein S10
Chain N
30S ribosomal protein S14

Coloring options:


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