3D structure

PDB id
4DR7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin bound
Experimental method
X-RAY DIFFRACTION
Resolution
3.75 Å

Loop

Sequence
CAAUG*CCCAGUUC*GCCG
Length
17 nucleotides
Bulged bases
4DR7|1|A|U|1240, 4DR7|1|A|U|1302
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4DR7_009 not in the Motif Atlas
Homologous match to J3_4LFB_009
Geometric discrepancy: 0.0952
The information below is about J3_4LFB_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_37047.6
Basepair signature
cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

4DR7|1|A|C|1237
4DR7|1|A|A|1238
4DR7|1|A|A|1239
4DR7|1|A|U|1240
4DR7|1|A|G|1241
*
4DR7|1|A|C|1296
4DR7|1|A|C|1297
4DR7|1|A|C|1298
4DR7|1|A|A|1299
4DR7|1|A|G|1300
4DR7|1|A|U|1301
4DR7|1|A|U|1302
4DR7|1|A|C|1303
*
4DR7|1|A|G|1334
4DR7|1|A|C|1335
4DR7|1|A|C|1336
4DR7|1|A|G|1337

Current chains

Chain A
16S rRNA

Nearby chains

Chain G
30S ribosomal protein S7
Chain M
30S ribosomal protein S13
Chain U
30S ribosomal protein THX

Coloring options:


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