J3_4DR7_012

3D structure

PDB id

4DR7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.75 Å

Loop

Sequence

UG*CGCCGAUGG*CAG

Length

14 nucleotides

Bulged bases

4DR7|1|A|U|723

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4DR7_012 not in the Motif Atlas

Homologous match to J3_5J7L_003

Geometric discrepancy: 0.1014

The information below is about J3_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_11934.4

Basepair signature

cWW-cWW-tWW-cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4DR7|1|A|U|672
4DR7|1|A|G|673
*
4DR7|1|A|C|717
4DR7|1|A|G|718
4DR7|1|A|C|719
4DR7|1|A|C|720
4DR7|1|A|G|721
4DR7|1|A|A|722
4DR7|1|A|U|723
4DR7|1|A|G|724
4DR7|1|A|G|725
*
4DR7|1|A|C|732
4DR7|1|A|A|733
4DR7|1|A|G|734

Current chains

Chain A

16S rRNA

Nearby chains

Chain F

30S ribosomal protein S6

Chain K

30S ribosomal protein S11

Chain O

30S ribosomal protein S15

Chain R

30S ribosomal protein S18

Chain a

5'-R(P*UP*GP*GP*AP*AP*AP*GP*(PSU))-3'