J3_4DR7_013
3D structure
- PDB id
- 4DR7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin bound
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.75 Å
Loop
- Sequence
- UG*UGUUG*CGCAA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4DR7_013 not in the Motif Atlas
- Homologous match to J3_5J7L_009
- Geometric discrepancy: 0.1113
- The information below is about J3_5J7L_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76043.3
- Basepair signature
- cWW-cWW-tSS-F-F-F-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
4DR7|1|A|U|1073
4DR7|1|A|G|1074
*
4DR7|1|A|U|1083
4DR7|1|A|G|1084
4DR7|1|A|U|1085
4DR7|1|A|U|1086
4DR7|1|A|G|1087
*
4DR7|1|A|C|1098
4DR7|1|A|G|1099
4DR7|1|A|C|1100
4DR7|1|A|A|1101
4DR7|1|A|A|1102
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain B
- 30S ribosomal protein S2
- Chain E
- 30S ribosomal protein S5
- Chain a
- 5'-R(P*UP*GP*GP*AP*AP*AP*GP*(PSU))-3'
Coloring options: